(Nov. 15,
2019 update)
1.学 術 論 文
2.著 書(解説・総説等)
3.講 演
4.国際会議での発表
1.学術論文
Sato,
T., Kikukawa, T., Miyoshi, R., Kajimoto, K., Yonekawa, C.,
Fujisawa, T., Unno, M., Eki,
T., Hirose, Y., Protochromic absorption changes in
the two-cysteine photocycle of a blue/orange cyanobacteriochrome,
J. Biol. Chem., accepted. Fujisawa,
T., Kiyota, H., Kikukawa, T., Unno, M., Low-Temperature Raman Spectroscopy of Halorhodopsin from Natronomonas pharaonis:
Structural Discrimination of Blue-Shifted and Red-Shifted Photoproducts, Biochemistry 58: 4159-4167 (2019). Iizuka,
A., Kajimoto, K., Fujisawa, T., Tsukamoto, T., Aizawa, T., Kamo, N., Jung, KH,
Unno, M., Demura, M., Kikukawa, T., Functional importance of the
oligomer formation of the cyanobacterial H+ pump Gloeobacter rhodopsin, Sci. Rep. 9:
10711 (2019). Yanagi, T., Takagi, T., Takahashi, H., Kikukawa,
T., Amii, H., Sonoyama,
M., Comparison of two different partially fluorinated phosphatidylcholines
with the perfluorobutyl group on thermotropic
properties of the bilayer membrane and reconstituted bacteriorhodopsin, Biophys. Rev. 11: 395-398 (2019). Geng, X., Dai, G., Chao, L., Wen, D., Kikukawa,
T., Iwasa, T., Two Consecutive Polar Amino
Acids at the End of Helix E are Important for Fast Turnover of the
Archaerhodopsin Photocycle, Photochem. Photobiol., 95: 980-989 (2019). Takahashi,
H., Yoshino, M., Morita, K., Takagi, T., Yokoyama, Y., Kikukawa,
T., Amii, H., Kanamori, T., Sonoyama,
M., Stability of the two-dimensional lattice of bacteriorhodopsin
reconstituted in partially fluorinated phosphatidylcholine bilayers, BBA-Biomembranes,
1861: 631-642 (2019) DOI: 10.1016/j.bbamem.2018.12.015 Hasemi, T., Kikukawa, T.,
Watanabe, Y., Aizawa, T., Miyauchi,
S., Kamo, N., Demura, M.,
Photochemical study of a cyanobacterial chloride-ion pumping rhodopsin, BBA-Bioenergetics, 1860: 136-146
(2019) Tsukamoto,
T., Kikuchi, C., Suzuki, H., Aizawa, T., Kikukawa, T., Demura,
M., Implications for the impairment of the rapid channel closing of Proteomonas sulcata anion channelrhodopsin 1 at high Cl- concentrations, Sci. Rep., 8: 13445 (2018) Fujisawa,
T., Abe, M., Tamogami, J., Kikukawa,
T., Kamo, N., Unno,
M., Low-temperature Raman spectroscopy reveals small chromophore distortion
in primary photointermediate of proteorhodopsin.,
FEBS Lett. 592:3054-3061 (2018) Tamogami, J., Kikukawa, T., Ohkawa, K., Ohsawa, N., Nara,
T., Demura, M., Miyauchi,
S., Kimura-Someya, T., Shirouzu, M., Yokoyama, S., Shimono,
K., Kamo, N., Interhelical interactions between D92
and C218 in the cytoplasmic domain regulate proton uptake upon N-decay in the
proton transport of Acetabularia
rhodopsin II, J. Photochem.
Photobiol. B, 183: 35-45 (2018) Dai,
G., Geng, X., Chao, L., Tamogami,
J., Kikukawa, T., Demura,
M., Kamo, N., Iwasa, T.,
Photocycle of Sensory Rhodopsin II from Halobacterium
salinarum (HsSRII):
Mutation of D103 Accelerates M Decay and Changes the Decay Pathway of a
13-cis O-like Species, Photochem. Photobiol.,
94: 705-714 (2018) Nakajima,
Y., Tsukamoto, T., Kumagai, Y., Ogura, Y., Hayashi,
T., Song, J., Kikukawa, T., Demura, M., Kogure, K., Sudo, Y., Yoshizawa, S., Microbes Environ. 33: 89-97 (2018) Amrutha,
A.S., Kumar, K.R.S., Kikukawa, T., Tamaoki, N., Targeted Activation of Molecular
Transportation by Visible Light, ACS
Nano, 11: 12292-12301 (2017) Inoue,
S., Yoshizawa, S., Nakajima, Y., Kojima, K., Tsukamoto, T., Kikukawa, T., Sudo,
Y., Spectroscopic characteristics of Rubricoccus marinus
xenorhodopsin (RmXeR) and
a putative model for its inward H+ transport mechanism, Phys. Chem. Chem. Phys. (2017), DOI: 10.1039/c7cp05033j Yokoyama,
Y., Tanaka, H. Yano, S., Takahashi, H., Kikukawa, T., Sonoyama, M., Takenaka, K., Spontaneous stacking of purple membranes
during immobilization with physical cross-linked poly(vinyl
alcohol) hydrogel with retaining native-like functionality of
bacteriorhodopsin, J. Appl. Phys., 121, 204701 (2017). Kajimoto, K., Kikukawa, T., Nakashima, H., Yamaryo,
H., Saito, Y., Fujisawa, T., Demura, M., Unno, M., Transient Resonance Raman Spectroscopy of a
Light-Driven Sodium-Ion-Pump Rhodopsin from Indibacter
alkaliphilus, J. Phys. Chem. B., 121: 4431-4437
(2017) Tsukamoto,
T., Yoshizawa, S., Kikukawa,
T., Demura, M., Sudo, Y.,
Implications for the Light-Driven Chloride Ion Transport Mechanism of Nonlabens marinus Rhodopsin 3 by Its
Photochemical Characteristics, J.
Phys. Chem. B., 121: 2027-2038 (2017) Tamogami, J., Kikukawa, T., Nara, T., Demura,
M., Kimura-Someya, T., Shirouzu, M., Yokoyama, S., Miyauchi,
S., Shimono, K., Kamo,
N., Existence of two O-like intermediates in the photocycle of Acetabularia rhodopsin II, a light-driven proton
pump from a marine alga, Biophys. Physicobiol., 14: 49-55 (2017) Nakamura,
S., Kikukawa, T., Tamogami, J., Kamiya, M., Aizawa, T., Hahn,
M., Ihara, K., Kamo, N., Demura,
M., Photochemical characterization of actinorhodopsin
and its functional existence in the natural host, BBA-BIOENERGETICS,
1857: 1900-1908 (2016) Tamogami, J., Sato, K., Kurokawa, S., Yamada,
T., Nara, T., Demura, M., Miyauchi,
S., Kikukawa,
T., Muneyuki, E., Kamo, N.,
Formation of M-Like Intermediates in Proteorhodopsin
in Alkali Solutions (pH ≥ ∼8.5) Where the Proton Release Occurs First in
Contrast to the Sequence at Lower pH, Biochemistry 55: 1036-1048
(2016) Kuddus, MR., Rumi, F., Tsutsumi, M.,
Takahashi, R., Yamano, M., Kamiya,
M., Kikukawa, T., Demura, M., Aizawa, T., Expression, purification and characterization
of the recombinant cysteine-rich antimicrobial peptide snakin-1 in Pichia
pastoris, Protein Expr. Purif. 122:
15-22 (2016) Tamaki,
H., Egawa, A., Kido, K., Kameda, T., Kamiya, M., Kikukawa, T., Aizawa, T.,
Fujiwara, T., Demura, M., Structure determination
of uniformly 13C, 15N labeled protein using qualitative distance restraints
from MAS solid-state 13C-NMR observed paramagnetic relaxation enhancement, J.
Biol. NMR 64: 87-101 (2016) Tsutsumi, M., Muto, H., Myoba, S., Kimoto, M.,
Kitamura, A., Kamiya, M., Kikukawa, T., Takiya, S., Demura, M., Kawano, K., Kinjo, M., Aizawa,
T., In vivo fluorescence-correlation spectroscopy analyses of FMBP-1,
a silkworm transcription factor, FEBS Open Bio. 6: 106-125 (2016) Hasemi, T., Kikukawa,
T., Kamo, N., Demura, M.,
Characterization of a Cyanobacterial Chloride-Pumping Rhodopsin and its
Conversion into a Proton Pump, J. Biol. Chem. 291: 355-362 (2016). Baek, M., Kamiya, M., Kushibiki,
T., Nakazumi, T., Tomisawa,
S., Abe, C., Kumaki, Y., Kikukawa, T., Demura, M.,
Kawano, K., Aizawa, T., Lipopolysaccharide-bound
structure of the antimicrobial peptide cecropin P1 determined by nuclear
magnetic resonance spectroscopy, J. Pept. Sci.,
22: 214-221 (2015) Furuse, M., Tamogami, J., Hosaka,
T., Kikukawa, T., Shinya, N., Hato, M., Ohsawa, N., Kim, S.Y., Jung, K.-H., Demura,
M., Miyauchi, S., Kamo,
N., Shimono, K., Kimura-Someya, T., Yokoyama, S.,
Shirouzu, M., Structural basis for the slow photocycle and late proton
release in Acetabularia rhodopsin I from the
marine plant Acetabularia acetabulum,
Acta Crystallogr. D Biol. Crystallogr.
D71: 2203-2216 (2015).
Chaoluomeng, Dai, G., Kikukawa, T., Ihara, K., Iwasa,
T., Microbial rhodopsins of Halorubrum
species isolated from Ejinoor salt
lake in Inner Mongolia of China, Photochem.
Photobiol. Sci., 14: 1974-1982 (2015).
Kikukawa, T., Kusakabe, C., Kokubo, A., Tsukamoto,
T., Kamiya, M., Aizawa,
T., Ihara, K., Kamo, N., Demura,
M., Probing the Cl--pumping photocycle of pharaonis
halorhodopsin: Examinations with bacterioruberin,
an intrinsic dye, and membrane potential-induced modulation of the
photocycle, Biochim. Biophys.
Acta, 1847: 748-758 (2015).
Tomisawa, S., Sato, Y., Kamiya, M., Kumaki, Y., Kikukawa, T., Kawano, K., Demura, M., Nakamura, K., Ayabe, T., Aizawa, T., Efficient production of a correctly folded mouse α-defensin, cryptdin-4, by refolding during inclusion body solubilization, Protein Expr. Purif., 112: 21-28 (2015).
Tamogami, J., Iwano, K., Matsuyama, A., Kikukawa, T., Demura, M., Nara, T., Kamo, N., The effects of chloride ion binding on the photochemical properties of sensory rhodopsin II from Natronomonas pharaonis, J. Photochem. Photobiol. Sci., 141: 192-201 (2014).
Kushibiki, T., Kamiya, M., Aizawa, T., Kumaki, Y., Kikukawa, T., Mizuguchi, M., Demura, M., Kawabata, S., Kawano, K., Interaction between tachyplesin I, an antimicrobial peptide derived from horseshoe crab, and lipopolysaccharide, Biochim. Biophys. Acta, 1844: 527-534 (2014).
Shibasaki, K., Shigemura, H., Kikukawa, T., Kamiya, M., Aizawa, T., Kawano, K., Kamo, N., Demura, M., Role of Thr218 in the Light-Driven Anion Pump Halorhodopsin from Natronomonas pharaonis, Biochemistry, 52: 9257-9268 (2013).
Tomisawa, S., Hojo, E., Umetsu, Y., Ohki, S., Kato, Y., Miyazawa, M., Mizuguchi, M., Kamiya, M., Kumaki, Y., Kikukawa, T., Kawano, K., Demura, M., Aizawa, T., Overexpression of an antimicrobial peptide derived from C. elegans using an aggregation-prone protein coexpression system, AMB Express, 3: 45 (2013).
Tomisawa, S., Abe, C., Kamiya, M., Kikukawa, T., Demura, M., Kawano, K., Aizawa, T., A new approach to detect small peptides clearly and sensitively by Western blotting using a vacuum-assisted detection method, Biophysics, 9:79-83 (2013).
Yoshino, M., Kikukawa, T., Takahashi, H., Takagi, T., Yokoyama, Y., Amii, H., Baba, T., Kanamori, T., Sonoyama, M., Physicochemical Studies of Bacteriorhodopsin Reconstituted in Partially Fluorinated Phosphatidylcholine Bilayers, J. Phys. Chem. B, 117: 5422-5429 (2013)
Unno, M., Kikukawa, T., Kumauchi, M., Kamo, N., Exploring the active site structure of a photoreceptor protein by Raman optical activity, J. Phys. Chem. B, 117: 1321-1325 (2013)
Hayashi, S., Tamogami, J., Kikukawa, T., Okamoto, H., Shimono, K., Miyauchi, S., Demura, M., Nara, T., Kamo, N., Thermodynamic Parameters of Anion Binding to Halorhodopsin from Natronomonas pharaonis by Isothermal Titration Calorimetry, Biophys. Chem. 172: 61-67 (2013)
Tsukamoto T, Kikukawa T, Kurata T, Jung KH, Kamo N, Demura M., Salt bridge in the conserved His-Asp cluster in Gloeobacter rhodopsin contributes to trimer formation, FEBS Lett. 587: 322-327 (2013)
Tamogami, J., Kikukawa, T., Nara, T., Shimono, K., Demura, M., Kamo, N., The Photo-induced Proton Release in Proteorhodopsin at Low pH: The Possibility of the pKa Decrease of Asp227, Biochemistry 51: 9290-9301 (2012)
Reissig, L., Iwata, T., Kikukawa, T., Demura, M., Kamo, N., Kandori, H., Sudo, Y., The influence of halide binding on the hydrogen bonding network in the active site of Salinibacter sensory rhodopsin I, Biochemistry 51: 8802-8813 (2012)
Furutani, Y., Fujiwara, K., Kimura, T., Kikukawa, T., Demura, M., Kandori, H., Dynamics of Dangling Bonds of Water Molecules in pharaonis Halorhodopsin during Chloride Ion Transportation, J.Phys.Chem.Lett., 3: 2964-2969 (2012)
Tsukamoto, T., Sasaki, T., Fujimoto, K.J., Kikukawa, T., Kamiya, M., Aizawa, T., Kawano, K., Kamo, N., Demura, M., Homo-trimer Formation and Dissociation of pharaonis Halorhodopsin in Detergent System, Biophys. J. 102: 2906-2915 (2012)
Tamogami, J., Kikukawa, T., Ikeda, Y., Demura, M., Nara, T., Kamo, N., Photo-induced Bleaching of Sensory Rhodopsin II (Phoborhodopsin) from Halobacterium salinarum by Hydroxylamine: Identification of the Responsible Intermediates, J. Photochem. Photobiol. B, 106: 87-94 (2012)
Kikukawa, T., Shimono, K., Tamogami, J., Miyauchi, S., Kim, S., Kimura-Someya, T., Shirouzu, M., Jung, K.-H., Yokoyama, S., Kamo, N., Photochemistry of Acetabularia Rhodopsin II from a Marine Plant, Acetabularia acetabulum, Biochemistry 50: 8888-8898 (2011) Yamashita, Y., Kikukawa, T., Tsukamoto, T., Kamiya, M., Aizawa, T., Kawano, K., Miyauchi, S., Kamo, N., Demura, M., Expression of salinarum halorhodopsin in Escherichia coli cells: solubilization in the presence of retinal yields the natural state, Biochim. Biophys. Acta 1808: 2905-2912 (2011)
Wada, T., Shimono, K., Kikukawa, T., Hato, M., Shinya, N. Kim, S-Y., Kimura-Someya, T., Shirouzu, M., Tamogami, J., Miyauchi, S., Jung, K-W., Kamo, N., Yokoyama, S., Crystal structure of the eukaryotic light-driven proton pumping rhodopsin, Acetabularia rhodopsin II, from marine alga, J. Mol. Biol. 411: 986-998 (2011)
Tateishi, Y., Abe, T., Tamogami, J., Nakao, Y., Kikukawa, T., Kamo, N., Unno, M., Spectroscopic Evidence for the Formation of an N Intermediate during the Photocycle of Sensory Rhodopsin II (Phoborhodopsin) from Natronobacterium pharaonis, Biochemistry, 50: 2135-2143 (2011)
Sudo, Y, Ihara, K., Kobayashi, S., Suzuki, D., Irieda, H., Kikukawa, T., Kandori, H., Homma, M., A microbial rhodopsin with a unique retinal composition shows both sensory rhodopsin II and bacteriorhodopsin-like properties, J. Biol. Chem. 286: 5967-5976 (2011)
Nakao, Y., Kikukawa, T., Shimono, K., Tamogami, J., Kimitsuki, N., Nara, T., Unno, M., Ihara, K., Kamo, N., Photochemistry of a putative new class of sensory rhodopsin (SRIII) coded by xop2 of Haloarcular marismortui, J. Photochem. Photobiol. B, 102: 45-54 (2011) Tamogami, J., Kikukawa, T., Ikeda, Y., Takemura, A., Demura, M., Kamo, N., The photochemical reaction cycle and
photo-induced proton transfer of sensory rhodopsin II (phoborhodopsin)
from Halobacterium salinarum, Biophys.
J. 98: 1353-1363 (2010) Nonaka, Y, Muto, H., Aizawa, T., Okabe, E., Myoba,
S., Yokoyama, T., Saito, S., Tatami, F., Kumaki,
Y., Kamiya, M., Kikukawa, T., Mizuguchi, M.,
Takiya, S., Kinjo, M., Demura,
M., Kawano, K., STPR, a 23-Amino Acid Tandem Repeat Domain, Found in the
Human Function-Unknown Protein ZNF821, Biochemistry 49: 8367-8375 (2010) |
菊川峰志, プロテオロドプシン, 「光と生命の事典」, pp. 58-59, ISBN: 978-4-254-17161-7, 朝倉書店 (2016) Kikukawa, T., Kamo, N., Demura, M., Photochemistry of Halorhodopsin, In Optogenetics - Light-Sensing Proteins and Their Applications (Kandori, H., Yawo, H., Koizumi, A., Eds.), pp 47-62, ISBN: 978-4-431-55515-5, Springer (2015). 出村誠, 菊川峰志, 加茂直樹, ハロロドプシンの分子構造と機能解析, 「オプトジェネティクス-光工学と遺伝学による行動制御技術の最前線-」, pp. 24-33, エヌ・ティー・エス (2013) |
3.講 演
※口頭発表者を太字で表示
菊川峰志, 「微生物ロドプシンのホモ多量体形成の機能的意義」, 東京大学物性研究所ワークショップ「レチナールタンパク質の光機能発現の物理と化学」(2019年9月6日, 柏市) Kikukawa, T., Cyanobacterial rhodopsin having TSD motif, 8th Asia and Oceania Conference on Photobiology (Nov. 15, 2017, Seoul, Korea) Kikukawa, T., Kamo, N., Demura, M., Light-induced conformational change of inward Cl- pump halorhodopsin, 13th International Conference on Flow Dynamics (Oct. 2016, Sendai, Japan) 菊川峰志,「時間分解吸収分光で膜蛋白質の反応中間体を捕らえる」,第10回日本蛋白質科学会年会(2010年6月, 札幌) |
Murabe, K., Kato, T., Tsukamoto, T., Aizawa,
T., Demura, M., Kikukawa,
T., Time-resolved detection of Na+ uptake and release reactions of
Na+-pumping rhodopsin, 9th Asia and Oceania Conference on Photobiology (Sep.
2019, Qingdao, China) Kikukawa, T., Sasaki, S., Nishiya, K., Tsukamoto, T., Aizawa,
T., Demura, M., Tamogami,
J., Replacements of “H+ donor” residues in the light-driven H+-pump rhodopsins, 17th International Congress on Photobiology
(Aug. 2019, Barcelona, Spain) Kikukawa, T., Iizuka, A., Kajimoto, K., Fujisawa, T., Tsukamoto, T., Aizawa, T., Jung, K.H., Kamo,
N., Unno, M., Demura, M.,
Functional importance of trimer formation of light-driven H+ pump Gloeobacter rhodopsin, 18th International Conference on
Retinal Proteins (Sep. 2018, Hockley Valley Resort, Canada) Kurihara, M., Hashimoto, M., Yoshizawa, S., Kojima, K.,
Tsukamoto, T., Kikukawa, T., Sudo, Y., An elevated pKa of
the protonated retinal Schiff base counterion Asp as a key factor for
efficient ion transport in Na+ pumping rhodopsins,
18th International Conference on Retinal Proteins (Sep. 2018, Hockley Valley
Resort, Canada) Tsukamoto, T., Kikuchi, C.,
Suzuki, H., Aizawa, T., Kikukawa,
T., Demura, M., Anion concentration dependency
on the photocycle of PsuACR1: Implications for the impairment of its fast
channel closing, 18th International Conference on Retinal Proteins (Sep.
2018, Hockley Valley Resort, Canada) Yoshino, M., Takahashi, H.,
Yokoyama, Y., Takagi, T., Amii, H., Kanamori, T., Kikukawa, T., Sonoyama,
M., Thermal Stability of the Hexagonal Lattice Packing Structure of
Bacteriorhodopsin in Partially Fluorinated Phospholipid Bilayers, 59th
International Conference on the Bioscience of Lipids (Sep. 2018, Helsinki,
Finland) Kikukawa, T., Hasemi, T., Aizawa, T., Kamo, N., Demura, M.,
Photochemistry of cyanobacterial chloride ion-pumping rhodopsin, 19th
International Union of Pure and Applied Biophysics (IUPAB) and 11th European
Biophysical Societies' Association (EBSA) Congress (Jul. 19, 2017, Edinburgh,
UK) Tamaki, H., Saito, Y., Egawa, A., Kikukawa, T., Fujiwara, T., Demura, M., Solid-state NMR analysis of sodium ion pump rhodopsin and its Na+-binding, 17th International Conference on Retinal Proteins (Oct. 2016, Potsdam, Germany) Tamogami, J., Kikukawa, T., Nara, T., Demura, M., Muneyuki, E., Kamo, N., Inversion of sequence and direction of the proton transfer in proteorhodopsin at high pH, The 2015 International Chemical Congress of Pacific Basin Societies (Dec. 19, 2015, Honolulu, USA) Shibasaki, K., Shigemura, H., Kikukawa, T., Kamiya, M., Aizawa, T., Kamo, N., Demura, M., The Importance of Thr218 for Cl--Pumping Photocycle of Natronomonas pharaonis Halorhodopsin, 16th International Conference on Retinal Proteins (Nov. 2014, Nagahama, Japan) Hasemi, T., Kikukawa, T., Kamiya, M., Aizawa, T., Jung, KH., Kamo, N., Demura, M., Proton Transfer Reactions of Anabaena Sensory Rhodopsin, 16th International Conference on Retinal Proteins (Nov. 2014, Nagahama, Japan) Nakamura, S., Kikukawa, T., Kamiya, M., Aizawa, T., Hahn, MW., Kamo, N., Demura, M., Photochemistry of the H+-Pumping Rhodopsin from Freshwater Actinobacteria, 16th International Conference on Retinal Proteins (Nov. 2014, Nagahama, Japan) Kikukawa, T.,
Kokubo, A., Tsukamoto, T., Ihara, K., Kamo, N., Demura, N., When does
halorhodopsin capture and release Cl- during
photocycle? Examination by spectrum changes of an intrinsic voltage-sensitive
dye, bacterioruberin, 15th International Conference on Retinal Proteins (Oct.
2012, Ascona, Switzerland) |