2008

原著論文 Original Papers

  • Structural and functional characterization of the LldR from Corynebacterium glutamicum: a transcriptional repressor involved in L-lactate and sugar utilization
    Yong-Gui Gao, Hiroaki Suzuki, Hiroshi Itou, Yong Zhou, Yoshikazu Tanaka, Masaaki Wachi, Nobuhisa Watanabe, Isao Tanaka, and Min Yao
    Nucl. Acid Res. 36, 7110-7123 (2008) [Pubmed] [PDB: 2DI3]

  • Structural and Functional Analysis of a Glycoside Hydrolase Family 97 Enzyme from Bacteroides thetaiotaomicron
    Momoyo Kitamura, Masayuki Okuyama, Fumiko Tanzawa, Haruhide Mori, Yu Kitago, Nobuhisa Watanabe, Atsuo Kimura, Isao Tanaka and Min Yao
    J. Biol. Chem. 283, 36328-36337 (2008) [Pubmed] [PDB: 2D73 2ZQ0]

  • Structural Basis for Multimeric Heme Complexation through a Specific Protein-Heme Interaction: the case of the third NEAT domain of IsdH from Staphylococcus aureus
    Masato Watanabe, Yoshikazu Tanaka, Ayuko Suenaga, Makoto Kuroda, Min Yao, Nobuhisa Watanabe, Fumio Arisaka, Toshiko Ohta, Isao Tanaka and Kouhei Tsumoto
    J. Biol. Chem. 283, 28649-28659 (2008) [Pubmed] [PDB: 3QUG 3QUH]

  • A Helical String of Alternately Connected Two Three-helix Bundles for the 1.1-Megadalton Cell Wall-Associated Adhesion Protein Ebh from Staphylococcus aureus
    Yoshikazu Tanaka, Sou Sakamoto, Makoto Kuroda, Shuichiro Goda, Yong-Gui Gao, Kouhei Tsumoto, Yuzuru Hiragi, Min Yao, Nobuhisa Watanabe, Toshiko Ohta, and Isao Tanaka
    Structure 16, 488-496 (2008) [Pubmed] [PDB: 2DGJ]

  • Spontaneous asparaginyl deamidation of canine milk lysozyme under mild conditions
    Yasuhiro Nonaka, Tomoyasu Aizawa, Daisuke Akieda, Masanori Yasui, Masahiro Watanabe, Nobuhisa Watanabe, Isao Tanaka, Masakatsu Kamiya, Mineyuki Mizuguchi, Makoto Demura, Keiichi Kawano
    Proteins 72, 313-322 (2008) [Pubmed] [PDB: 2Z2E]

  • Structure of protein PH0536 from Pyrococcus horikoshii at 1.7 A resolution reveals a novel assembly of an oligonucleotide/oligosaccharide-binding fold and an α-helical bundle
    Yong-Gui Gao, Min Yao, and Isao Tanaka
    Proteins 71, 503-508 (2008) [Pubmed] [PDB: 2E8G]

  • Crystal structure of the PH1932 protein, a unique archaeal ArsR type winged-HTH transcription factor from Pyrococcus horikoshii OT3
    Hiroshi Itou, Min Yao, Nobuhisa Watanabe, and Isao Tanaka
    Proteins 70, 1631-1634 (2008) [Pubmed] [PDB: 1ULY]

  • Crystal structure of an archaeal Ski2p-like protein from Pyrococcus horikoshii OT3
    Xiaodong Zhang, Takashi Nakashima, Yoshimitsu Kakuta, Min Yao, Isao Tanaka, and Makoto Kimura
    Protein Sci. 17, 136-145 (2008) [Pubmed] [PDB: 2Z41]

  • Staphylococcus aureus Surface Protein SasG Contributes to Intercellular Autoaggregation of Staphylococcus aureus
    Makoto Kuroda, Ryuta Ito, Yoshikazu Tanaka, Min Yao, Kimio Matoba, Shinji Saito, Isao Tanaka, Toshiko Ohta
    Biochem. Biophys. Res. Commun. 377, 1102-1106 (2008) [Pubmed]

  • Electron Microscopy and Computational Studies of Ebh, a Giant Cell-wall-associated Protein from Staphylococcus aureus
    Sou Sakamoto, Yoshikazu Tanaka, Isao Tanaka, Toshiaki Takei, Jian Yu, Makoto Kuroda, Min Yao, Toshiko Ohta, and Kouhei Tsumoto
    Biochem. Biophys. Res. Commun. 376, 261-266 (2008) [Pubmed]

  • Structure of mannosyl-3-phosphoglycerate phosphatase from Pyrococcus horikoshii
    Takashi Kawamura, Nobuhisa Watanabe and Isao Tanaka
    Acta Cryst. D64, 1267-1276 (2008) [Pubmed] [PDB: 2ZOS 1WZC]

  • Structural and functional analysis of the TetR-family transcriptional regulator SCO0332 from Streptomyces coelicolor
    Ui Okada, Kazuya Kondo, Takeshi Hayashi, Nobuhisa Watanabe, Min Yao, Tomohiro Tamura and Isao Tanaka
    Acta Cryst. D64, 198-205 (2008) [Pubmed] [PDB: 2ZCX 2ZB9]

  • Crystal Structure of SCO6571 from Streptomyces coelicolor A3(2)
    Parvin Begum, Naoki Sakai, Takeshi Hayashi, Yong-Gui Gao, Tomohiro Tamura, Nobuhisa Watanabe, Min Yao and Isao Tanaka
    Protein & Peptide Letters, 15, 709-712 (2008) [Pubmed] [PDB: 2ZDS]

  • Purification, Crystallization and Preliminary X-Ray Studies of AxCesD Required for Efficient Cellulose Biosynthesis in Acetobacter xylinum
    SongQing Hu, YongGui Gao, Kenji Tajima, Min Yao, Takanori Yoda, Daisuke Shimura, Yasuharu Satoh, Shin Kawano, Isao Tanaka and Masanobu Munekata
    Protein & Peptide Letters, 15, 115-117 (2008) [Pubmed] [PDB: 3AJ2 3AJ1 3A8E]

総説 Review Articles

  • 最近の研究から
    分子モデル構築と構造精密化を行う新ソフトウェアの開発
    姚閔
    日本結晶学会誌 50(3), 218-223 (2008) [J-STAGE]

  • 特集 タンパク3000プロジェクトの産んだもの
    第I部 成果とインパクト:個別的解析拠点の研究成果
    転写・翻訳 翻訳系蛋白質を中心に ‘Team transcription & translation’ aiming at 100 structures
    田中勲,渡邉信久,姚閔,坂井直樹
    蛋白質 核酸 酵素 53(5), 608-611 (2008) [共立出版PNE]

紀要・その他 Others

  • Molecular biochemistry of a xyloglucanase, Cel44A from Clostridium thermocellum unveiled by X-ray crystallography
    Yu Kitago, Shuichi Karita, Nobuhisa Watanabe, Kazuo Sakka, and Isao Tanaka
    MIE BIOFORUM 2008 Proceedings, 331-340 (2008)

  • 長波長X線利用による天然型タンパク質の結晶構造解析
    北郷悠,渡邉信久
    蛋白質科学会アーカイブ プロトコール #28 (2008年6月9日公開) [PSSJ]