2006

原著論文 Original Papers

  • Ammonia Channel Couples Glutaminase with Transamidase Reactions in GatCAB
    Akiyoshi Nakamura, Min Yao, Sarin Chimnaronk, Naoki Sakai, Isao Tanaka
    Science 312, 1954-1958 (2006) [Pubmed] [PDB: 2DF4 2DQN 2G5H 2G5I 2F2A] [Newspaper(Japanese)]

  • Structure of archaeal translational initiation factor 2 βγ-GDP reveals significant conformational change of the β-subunit and switch 1 region
    Masaaki Sokabe, Min Yao, Naoki Sakai, Shingo Toya, and Isao Tanaka
    Proc. Natl. Acad. Sci. USA, 103, 13016-13021 (2006) [Pubmed] [PDB: 2D74 2DCU]

  • Crystal Structure of Protein Ph1481p in Complex with Protein Ph1877p of Archaeal RNase P from Pyrococcus horikoshii OT3: Implication of Dimer Formation of the Holoenzyme
    Shin Kawano, Takashi Nakashima, Yoshimitsu Kakuta, Isao Tanaka and Makoto Kimura
    J. Mol. Biol. 357, 583-591 (2006) [Pubmed] [PDB: 2CZV]

  • In vitro reconstitution of the GTPase-associated centre of the archaebacterial ribosome: the functional features observed in a hybrid form with Escherichia coli 50S subunits
    Takaomi Nomura, Kohji Nakano, Yasushi Maki, Takao Naganuma, Takashi Nakashima, Isao Tanaka, Makoto Kimura, Akira Hachimori and Toshio Uchiumi
    Biochem. J. 396, 565-571 (2006) [Pubmed]

  • Structural Characterization of the Acetobacter xylinum Endo-β-1,4-Glucanase CMCax Required for Cellulose Biosynthesis
    Yoshiaki Yasutake, Shin Kawano, Kenji Tajima, Min Yao, Yasuharu Satoh, Masanobu Munekata, and Isao Tanaka
    Proteins 64, 1069-1077 (2006) [Pubmed] [PDB: 1WZZ]

  • Crystal structure of an RtcB homolog protein (PH1602-extein protein) from Pyrococcus horikoshii reveals a novel fold
    Chiaki Okada, Yuki Maegawa, Min Yao, Isao Tanaka
    Proteins 63, 1119-1122 (2006) [Pubmed] [PDB: 1UC2]

  • Structural analysis of the transcriptional regulator homolog protein from Pyrococcus horikoshii OT3
    Ui Okada, Naoki Sakai, Min Yao, Nobuhisa Watanabe, and Isao Tanaka
    Proteins 63, 1084-1086 (2006) [Pubmed] [PDB: 1UB9]

  • Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain
    Akio Ebihara, Min Yao, Ryoji Masui, Isao Tanaka, Shigeyuki Yokoyama, and Seiki Kuramitsu
    Protein Science 15, 1494-1499 (2006) [Pubmed] [PDB: 1WJ9]

  • New algorithm for protein model building: extending partial model in map segment
    Yong Zhou, Min Yao, Isao Tanaka
    J. Appl. Cryst. 39, 57-63 (2006) [Journal]

  • From phasing to structure refinement in-house: Cr/Cu dual-wavelength system and a loopless free crystal-mounting method
    N. Watanabe
    Acta. Cryst. D62, 891-896 (2006) [Pubmed]

  • SAD phasing by OASIS-2004: case studies of dual-space fragment extension
    D. Yao, S. Huang, J. Wang, Y. Gu, C. Zheng, H. Fan, N. Watanabe and I. Tanaka
    Acta. Cryst. D62, 883-890 (2006) [Pubmed]

  • Crystal structure of A-type ATP synthase catalytic nucleotide-binding subunit A from Pyrococcus horikoshii reveals a novel domain related in the peripheral stalk
    Yuki Maegawa, Hazuki Morita, Daisuke Iyaguchi, Min Yao, Nobuhisa Watanabe and Isao Tanaka
    Acta. Cryst. D62, 483-488 (2006) [Pubmed] [PDB: 3I4L 3I72 3I73 3IKJ 3M4Y 3MFY 3ND8 3ND9 3P20 3QG1 3QIA 3QJY 3SDZ 3SE0]

  • LAFIRE: software for automating the refinement process of protein-structure analysis
    Min Yao, Yong Zhou and Isao Tanaka
    Acta. Cryst. D62, 189-196 (2006) [Pubmed]

  • The structure of a Pyrococcus horikoshii 2'-5' RNA ligase at 1.94Å resolution reveals a possible open form with a wider active-site cleft
    Yong-Gui Gao, Min Yao, Ayuko Okada and Isao Tanaka
    Acta. Cryst. F62, 1196-1200 (2006) [Pubmed] [PDB: 1VGJ]

  • Crystallization and Preliminary X-Ray Studies of the DNA-Binding Domain of Hepatocyte Nuclear Factor-6α Complexed with DNA
    Daisuke Iyaguchi, Min Yao, Nobuhisa Watanabe, Jun Nishihira and Isao Tanaka
    Protein & Peptide Letters, 13, 531-533 (2006) [Pubmed]

  • Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins
    Takuya B. Hiyama, Min Zhao, Yu Kitago, Min Yao, Shun-ichi Sekine, Takaho Terada, Chizu Kuroishi, Zhi-Jie Liu, John P. Rose, Seiki Kuramitsu, Mikako Shirouzu, Nobuhisa Watanabe, Shigeyuki Yokoyama, Isao Tanaka, and Bi-Cheng Wang
    J. Struct. Funct. Genom. 7, 119-129 (2006) [Pubmed] [PDB: 2D59 2D5A]

総説 Review Articles

  • 入門講座 タンパク質結晶構造解析入門−ブラックボックスの中身− (3)モデリングの裏側をのぞいてみよう
    「分子モデルの構築」 姚閔
    日本結晶学会誌 48(5), 320-326 (2006年10月号) [J-STAGE]

  • ループレス結晶マウント法の開発とCr 線による非標識タンパク質の結晶構造解析
    渡邉信久
    日本結晶学会誌 48(4), 271-276 (2006年8月号) [J-STAGE]

  • 入門講座 タンパク質結晶構造解析入門−ブラックボックスの中身− (1)回折実験法の裏側をのぞいてみよう
    「(1.1)回折理論」 田中勲
    日本結晶学会誌 48(3), 172-181 (2006年6月号) [J-STAGE]

単行本 Books

  • 「5章 生体高分子の結晶構造」 三木邦夫,喜田昭子,宮武秀行,久野玉雄,田中勲,渡邉信久,姚閔
    『第5版 実験化学講座11 物質の構造III 回折』 231-278, 丸善株式会社 (2006年5月) [丸善出版]

特許 Patents

  • モノクローナル抗体の作成方法
    内海利男,佐藤弘恵,田中勲
    特許出願2006-295202 (出願日2006年10月31日)